SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    1442, 1445, 1459, 1453, 1417, 1433, 1439, 
    1444, 1411, 1415, 1456, 1428, 1422, 
    1465, 1414, 1427, 1470, 1468, 1441, 
    1429, 1454, 1430, 1431, 1440, 1435, 
    1457, 1467, 1458, 1432, 1434, 1410, 
    1471, 1436, 1419, 1463, 1451, 1420, 
    1449, 1412, 1448, 1447, 1426, 1437, 
    1460, 1464, 1421, 1462, 1409, 1416, 
    1472, 1452, 1425, 1438, 1424, 1413, 
    1450, 1469, 1455, 1443, 1418, 1634, 
    1664, 1641, 1671, 1627, 1657, 1655, 
    1686, 1646, 1677, 1636, 1666, 1638, 
    1668, 1644, 1674, 1642, 1672, 2185, 
    1629
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00067

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "69.51"
    },
    "grouping_operation": {
      "using_filesort": false,
      "table": {
        "table_name": "cscart_product_prices",
        "access_type": "range",
        "possible_keys": [
          "usergroup",
          "product_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "product_id",
        "used_key_parts": [
          "product_id"
        ],
        "key_length": "3",
        "rows_examined_per_scan": 110,
        "rows_produced_per_join": 21,
        "filtered": "19.97",
        "index_condition": "(`cscartdevel`.`cscart_product_prices`.`product_id` in (1442,1445,1459,1453,1417,1433,1439,1444,1411,1415,1456,1428,1422,1465,1414,1427,1470,1468,1441,1429,1454,1430,1431,1440,1435,1457,1467,1458,1432,1434,1410,1471,1436,1419,1463,1451,1420,1449,1412,1448,1447,1426,1437,1460,1464,1421,1462,1409,1416,1472,1452,1425,1438,1424,1413,1450,1469,1455,1443,1418,1634,1664,1641,1671,1627,1657,1655,1686,1646,1677,1636,1666,1638,1668,1644,1674,1642,1672,2185,1629))",
        "cost_info": {
          "read_cost": "67.31",
          "eval_cost": "2.20",
          "prefix_cost": "69.51",
          "data_read_per_join": "527"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "usergroup_id"
        ],
        "attached_condition": "((`cscartdevel`.`cscart_product_prices`.`lower_limit` = 1) and (`cscartdevel`.`cscart_product_prices`.`usergroup_id` in (0,1)))"
      }
    }
  }
}

Result

product_id price
1409 52.00000000
1410 66.00000000
1411 57.00000000
1412 59.00000000
1413 59.00000000
1414 58.00000000
1415 57.00000000
1416 59.00000000
1417 66.00000000
1418 68.00000000
1419 64.00000000
1420 54.00000000
1421 88.00000000
1422 67.00000000
1424 78.00000000
1425 52.00000000
1426 59.00000000
1427 64.00000000
1428 66.00000000
1429 55.00000000
1430 156.00000000
1431 78.00000000
1432 68.00000000
1433 64.00000000
1434 59.00000000
1435 64.00000000
1436 66.00000000
1437 52.00000000
1438 58.00000000
1439 68.00000000
1440 261.00000000
1441 69.00000000
1442 94.00000000
1443 62.00000000
1444 58.00000000
1445 64.00000000
1447 84.00000000
1448 94.00000000
1449 524.00000000
1450 58.00000000
1451 59.00000000
1452 294.00000000
1453 57.00000000
1454 64.00000000
1455 149.00000000
1456 794.00000000
1457 129.00000000
1458 98.00000000
1459 221.00000000
1460 136.00000000
1462 69.00000000
1463 102.00000000
1464 84.00000000
1465 84.00000000
1467 84.00000000
1468 68.00000000
1469 72.00000000
1470 69.00000000
1471 64.00000000
1472 58.00000000
1627 15.00000000
1629 15.00000000
1634 15.00000000
1636 15.00000000
1638 15.00000000
1641 15.00000000
1642 15.00000000
1644 15.00000000
1646 15.00000000
1655 15.00000000
1657 45.00000000
1664 45.00000000
1666 45.00000000
1668 45.00000000
1671 45.00000000
1672 45.00000000
1674 45.00000000
1677 45.00000000
1686 45.00000000
2185 15.75000000